1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGAAGAAGAAGAAAAATGGCAAATTTTGTTCTACAGTTTCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactactccccctatttctttttgtcaattaaaaattgtatatatttctctctctctctctctctctctctctctctctctctcaatctcaaatcatttatcttaatagcttataaaaaatgatttatttttaatatttag
species | Glycine max |
transcript | GLYMA20G02350.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACG GAGCTCCTCCTGGTGGTTCEST: gi|193495959|gb|FK461927.1|FK461927
genomic: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactact ... taatatttagGAGCTCCTCCTGGTGGTTC
EST: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACG GAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTGEST: gi|298188808|gb|HO035501.1|HO035501
genomic: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactact ... taatatttagGAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTG
EST: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACG GAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTGEST: gi|151410335|gb|EV280150.1|EV280150
genomic: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactact ... taatatttagGAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTG
EST: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACG GAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTGEST: gi|298194077|gb|HO040725.1|HO040725
genomic: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactact ... taatatttagGAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTG
EST: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACG GAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTG
genomic: TCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactact ... taatatttagGAGCTCCTCCTGGTGGTTCTGGAAGCAGTAGTGGTGGGGGTGGGGGCCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGAAGAAGAAAAATGGCAAATTTTGTTCTACAGTTTCCAAATACTTTGAGGAGTTTCGCTGTGTCTGCTTCCTCCAACTCCAACGgtgcactactccccctatttctttttgtcaattaaaaattgtatatatttctctctctctctctctctctctctctctctctctctcaatctcaaatcatttatcttaatagcttataaaaaatgatttatttttaatatttag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG