Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctaccacttctcatactactgaaatctttttctacagcactgtgctttttgatagctctcaagttgattatcatatagtaagcaaaaacagacat...

Basic information

species Glycine max
transcript GLYMA20G02250.5
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411394|gb|EV281205.1|EV281205
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTTGGGTGGACTTTTGGG
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTT-GGGTGGACTTTTGGG
EST: gi|192298857|gb|FG987602.1|FG987602
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|21889812|gb|BQ743025.1|BQ743025
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151411906|gb|EV281717.1|EV281717
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|192297704|gb|FG989594.1|FG989594
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|31311039|gb|CD396242.1|CD396242
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|4290003|gb|AI441556.1|AI441556
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151406805|gb|EV276620.1|EV276620
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|7030299|gb|AW460082.1|AW460082
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|38191065|gb|CF920271.1|CF920271
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151410280|gb|EV280095.1|EV280095
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|6502166|gb|AW203539.1|AW203539
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|58024151|gb|CX710892.1|CX710892
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|9984033|gb|BE658141.1|BE658141
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|4303689|gb|AI443512.1|AI443512
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|6847047|gb|AW349337.1|AW349337
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|16347857|gb|BI973452.1|BI973452
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151405553|gb|EV275367.1|EV275367
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|8826149|gb|BE209809.1|BE209809
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTCTTAGCTGGAGGTATATCTGGGTGGACTTTTTGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151407497|gb|EV277312.1|EV277312
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|193642681|gb|FK593351.1|FK593351
EST:     TATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: TATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|58023963|gb|CX710704.1|CX710704
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|254338822|gb|GR847539.1|GR847539
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|192300181|gb|FG989303.1|FG989303
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGG
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTT-AGCTGGAGGTATATTTGGGTGGACTTTTGGG
EST: gi|151400953|gb|EV270767.1|EV270767
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCAGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|58016067|gb|CX702809.1|CX702809
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|193523857|gb|FK482232.1|FK482232
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|208024175|gb|GD823777.1|GD823777
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAATGAGTTTACATG                         GCGCTGGACTGTCATTTTTAG
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAG
EST: gi|214006862|gb|DB988369.1|DB988369
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|192305829|gb|FG995421.1|FG995421
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|7234337|gb|AW569676.1|AW569676
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|18039018|gb|BM307312.1|BM307312
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|58023111|gb|CX709852.1|CX709852
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151399940|gb|EV269811.1|EV269811
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|192317711|gb|FK008603.1|FK008603
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|151407348|gb|EV277163.1|EV277163
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
EST: gi|254333478|gb|GR848396.1|GR848396
EST:     AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATG                         GCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC
genomic: AGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctacc ... tattaaacagGCGCTGGACTGTCATTTTTAGCTGGAGGTATATTTGGGTGGACTTTTGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTACATGgtaatctaccacttctcatactactgaaatctttttctacagcactgtgctttttgatagctctcaagttgattatcatatagtaagcaaaaacagacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG