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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatttcacctgctggaatattaaatttatattgaagttttccatcaaaatactatgatctgaagtgctgtgtgggtaatttcccttttcccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTAC

Basic information

species Glycine max
transcript GLYMA20G02250.5
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411394|gb|EV281205.1|EV281205
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192298857|gb|FG987602.1|FG987602
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCTTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|21889812|gb|BQ743025.1|BQ743025
EST:     TCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151411906|gb|EV281717.1|EV281717
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGTTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192297704|gb|FG989594.1|FG989594
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|31311039|gb|CD396242.1|CD396242
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151406805|gb|EV276620.1|EV276620
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|7030299|gb|AW460082.1|AW460082
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|38191065|gb|CF920271.1|CF920271
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151410280|gb|EV280095.1|EV280095
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAACTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|6502166|gb|AW203539.1|AW203539
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58024151|gb|CX710892.1|CX710892
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|9984033|gb|BE658141.1|BE658141
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|4303689|gb|AI443512.1|AI443512
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|6847047|gb|AW349337.1|AW349337
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|16347857|gb|BI973452.1|BI973452
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151405553|gb|EV275367.1|EV275367
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|8826149|gb|BE209809.1|BE209809
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151407497|gb|EV277312.1|EV277312
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58023963|gb|CX710704.1|CX710704
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192300181|gb|FG989303.1|FG989303
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151400953|gb|EV270767.1|EV270767
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58016067|gb|CX702809.1|CX702809
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|214006862|gb|DB988369.1|DB988369
EST:     GCTCTGATGTCGACGAGTTCATTGCTTCTGATCCTGTTCGCACACCCATC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCAAAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192305829|gb|FG995421.1|FG995421
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|7234337|gb|AW569676.1|AW569676
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|18039018|gb|BM307312.1|BM307312
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58023111|gb|CX709852.1|CX709852
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151399940|gb|EV269811.1|EV269811
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192317711|gb|FK008603.1|FK008603
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151407348|gb|EV277163.1|EV277163
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|254333478|gb|GR848396.1|GR848396
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaatactatgatctgaagtgctgtgtgggtaatttcccttttcccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTAC
                                taatttcccttttccc  CT-rich tract
                                taattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtatttcacctgctggaatattaaatttatattgaagttttccatcaaaatactatgatctgaagtgctgtgtgggtaatttcccttttcccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG