Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttaggctttccctgctttaattctaacatgcactgaaattttacttgattcagtgattaatctttgtgggtgattgaatttggctggttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAG

Basic information

species Glycine max
transcript GLYMA20G02250.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039018|gb|BM307312.1|BM307312
EST:     ACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: ACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58023963|gb|CX710704.1|CX710704
EST:     CGTTACTTTTCCACTTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|9984033|gb|BE658141.1|BE658141
EST:     ATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: ATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298196778|gb|HO041521.1|HO041521
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298186399|gb|HO037032.1|HO037032
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAAACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192326089|gb|FK016241.1|FK016241
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298176829|gb|HO023302.1|HO023302
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192300181|gb|FG989303.1|FG989303
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|213594258|gb|DB969964.1|DB969964
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298189915|gb|HO038318.1|HO038318
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCATACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298196064|gb|HO044455.1|HO044455
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298180813|gb|HO022252.1|HO022252
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|12773868|gb|BG238795.1|BG238795
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58023111|gb|CX709852.1|CX709852
EST:     CTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192326018|gb|FK016200.1|FK016200
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGGTTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|7030299|gb|AW460082.1|AW460082
EST:     CTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151400953|gb|EV270767.1|EV270767
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192297704|gb|FG989594.1|FG989594
EST:     CTTCTAG-CACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192328392|gb|FK020103.1|FK020103
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151413273|gb|EV283081.1|EV283081
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298192922|gb|HO033356.1|HO033356
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151407348|gb|EV277163.1|EV277163
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACCTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151411906|gb|EV281717.1|EV281717
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|4288413|gb|AI441329.1|AI441329
EST:     AGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: AGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|38191065|gb|CF920271.1|CF920271
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGGCAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192317710|gb|FK008602.1|FK008602
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192298857|gb|FG987602.1|FG987602
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298170171|gb|HO018795.1|HO018795
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTT-CAAC-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298169734|gb|HO021094.1|HO021094
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151410280|gb|EV280095.1|EV280095
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|209726947|gb|BW680276.1|BW680276
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58024151|gb|CX710892.1|CX710892
EST:     CGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58023141|gb|CX709882.1|CX709882
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACTTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192326830|gb|FK015102.1|FK015102
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|6847047|gb|AW349337.1|AW349337
EST:     TTTAATCTTCGTCAACGTTACTTTTCCA----NNNC-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: TTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|213617808|gb|DB959392.1|DB959392
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298185838|gb|HO030999.1|HO030999
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTT-CAAC-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151405812|gb|EV275627.1|EV275627
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298184275|gb|HO029488.1|HO029488
EST:     CTTCTAGCCACCCCTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298164242|gb|HO013887.1|HO013887
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298194227|gb|HO040875.1|HO040875
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACATAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58016067|gb|CX702809.1|CX702809
EST:     CTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|213587971|gb|DB971446.1|DB971446
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298179762|gb|HO024977.1|HO024977
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|6502166|gb|AW203539.1|AW203539
EST:     CTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298190666|gb|HO032787.1|HO032787
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298163655|gb|HO012388.1|HO012388
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|4395857|gb|AI494854.1|AI494854
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298173259|gb|HO020243.1|HO020243
EST:     CTTCTAGCCACCCTTTAATCTTCGCCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151407497|gb|EV277312.1|EV277312
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151412014|gb|EV281825.1|EV281825
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151396359|gb|EV266236.1|EV266236
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-C-                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192305829|gb|FG995421.1|FG995421
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|19453348|gb|BM954758.1|BM954758
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58016066|gb|CX702808.1|CX702808
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151405553|gb|EV275367.1|EV275367
EST:     CGTCAACGTTACCTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192317711|gb|FK008603.1|FK008603
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151406805|gb|EV276620.1|EV276620
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298169572|gb|HO020932.1|HO020932
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151399940|gb|EV269811.1|EV269811
EST:     CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTACGgtaacacacg ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgattcagtgattaatctttgtgggtgattgaatttggctggttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAG
             gattaat  putative branch site (score: 3)
              attaatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttaggctttccctgctttaattctaacatgcactgaaattttacttgattcagtgattaatctttgtgggtgattgaatttggctggttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - -ctttccc
- - - - - - - - tgcttta
- - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggctg