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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatttcacctgctggaatattaaatttatattgaagttttccatcaaaatactatgatctgaagtgctgtgtgggtaatttcccttttcccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTAC

Basic information

species Glycine max
transcript GLYMA20G02250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023111|gb|CX709852.1|CX709852
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58016066|gb|CX702808.1|CX702808
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151413273|gb|EV283081.1|EV283081
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|213587971|gb|DB971446.1|DB971446
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCATC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151411394|gb|EV281205.1|EV281205
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151396359|gb|EV266236.1|EV266236
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151412014|gb|EV281825.1|EV281825
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298186399|gb|HO037032.1|HO037032
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298173259|gb|HO020243.1|HO020243
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151407497|gb|EV277312.1|EV277312
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58023141|gb|CX709882.1|CX709882
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|213594258|gb|DB969964.1|DB969964
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192326089|gb|FK016241.1|FK016241
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAATGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298170171|gb|HO018795.1|HO018795
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|21889812|gb|BQ743025.1|BQ743025
EST:     TCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|12773868|gb|BG238795.1|BG238795
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|31311039|gb|CD396242.1|CD396242
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|4395857|gb|AI494854.1|AI494854
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192317711|gb|FK008603.1|FK008603
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192317710|gb|FK008602.1|FK008602
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151407348|gb|EV277163.1|EV277163
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58023963|gb|CX710704.1|CX710704
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|7030299|gb|AW460082.1|AW460082
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|4303689|gb|AI443512.1|AI443512
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298180813|gb|HO022252.1|HO022252
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58016067|gb|CX702809.1|CX702809
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298179762|gb|HO024977.1|HO024977
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298176829|gb|HO023302.1|HO023302
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298164242|gb|HO013887.1|HO013887
EST:     GCTCTGATGTCGAGGAGTTCGTTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|6847047|gb|AW349337.1|AW349337
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192298857|gb|FG987602.1|FG987602
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCTTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|16347857|gb|BI973452.1|BI973452
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192297704|gb|FG989594.1|FG989594
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298194227|gb|HO040875.1|HO040875
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|38191065|gb|CF920271.1|CF920271
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298163655|gb|HO012388.1|HO012388
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|209726947|gb|BW680276.1|BW680276
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151406805|gb|EV276620.1|EV276620
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|18039018|gb|BM307312.1|BM307312
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298169572|gb|HO020932.1|HO020932
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|213617808|gb|DB959392.1|DB959392
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151411906|gb|EV281717.1|EV281717
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGTTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192328392|gb|FK020103.1|FK020103
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298192922|gb|HO033356.1|HO033356
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|9984033|gb|BE658141.1|BE658141
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|4288413|gb|AI441329.1|AI441329
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTC
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTC
EST: gi|298185838|gb|HO030999.1|HO030999
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192300181|gb|FG989303.1|FG989303
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|58024151|gb|CX710892.1|CX710892
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|6502166|gb|AW203539.1|AW203539
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298190666|gb|HO032787.1|HO032787
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGACCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|19453348|gb|BM954758.1|BM954758
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|214006862|gb|DB988369.1|DB988369
EST:     GCTCTGATGTCGACGAGTTCATTGCTTCTGATCCTGTTCGCACACCCATC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCAAAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298189915|gb|HO038318.1|HO038318
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGCGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151410280|gb|EV280095.1|EV280095
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAACTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298169734|gb|HO021094.1|HO021094
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298196778|gb|HO041521.1|HO041521
EST:     CTCTGAT-TCCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: CTCTGATGTC-GAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151405553|gb|EV275367.1|EV275367
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|8826149|gb|BE209809.1|BE209809
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298184275|gb|HO029488.1|HO029488
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|7234337|gb|AW569676.1|AW569676
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151400953|gb|EV270767.1|EV270767
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|298196064|gb|HO044455.1|HO044455
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCATAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151405812|gb|EV275627.1|EV275627
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|151399940|gb|EV269811.1|EV269811
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192305829|gb|FG995421.1|FG995421
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|192326830|gb|FK015102.1|FK015102
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: gi|254333478|gb|GR848396.1|GR848396
EST:     GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC                         CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaatactatgatctgaagtgctgtgtgggtaatttcccttttcccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTAC
                                taatttcccttttccc  CT-rich tract
                                taattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtatttcacctgctggaatattaaatttatattgaagttttccatcaaaatactatgatctgaagtgctgtgtgggtaatttcccttttcccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGGGAGCATTATTTACTGCAGGCTATGCCTGGAAATATTCAAAGAGTTTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG