Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttaggctttccctgctttaattctaacatgcactgaaattttacttgattcagtgattaatctttgtgggtgattgaatttggctggttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAG

Basic information

species Glycine max
transcript GLYMA20G02250.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023111|gb|CX709852.1|CX709852
EST:     CTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|58023111|gb|CX709852.1|CX709852
EST:     CTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|58016066|gb|CX702808.1|CX702808
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|58016066|gb|CX702808.1|CX702808
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151413273|gb|EV283081.1|EV283081
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151413273|gb|EV283081.1|EV283081
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|213587971|gb|DB971446.1|DB971446
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|213587971|gb|DB971446.1|DB971446
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151396359|gb|EV266236.1|EV266236
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151412014|gb|EV281825.1|EV281825
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298186399|gb|HO037032.1|HO037032
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAAACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298186399|gb|HO037032.1|HO037032
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAAACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298173259|gb|HO020243.1|HO020243
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298173259|gb|HO020243.1|HO020243
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|151407497|gb|EV277312.1|EV277312
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|58023141|gb|CX709882.1|CX709882
EST:     CAACGTTACTTTTCCACTTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCAC--C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|58023141|gb|CX709882.1|CX709882
EST:     CAACGTTACTTTTCCACTTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCAC--C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|213594258|gb|DB969964.1|DB969964
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|213594258|gb|DB969964.1|DB969964
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192326089|gb|FK016241.1|FK016241
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192326089|gb|FK016241.1|FK016241
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298170171|gb|HO018795.1|HO018795
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|12773868|gb|BG238795.1|BG238795
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|12773868|gb|BG238795.1|BG238795
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|4395857|gb|AI494854.1|AI494854
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|4395857|gb|AI494854.1|AI494854
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192317711|gb|FK008603.1|FK008603
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192317711|gb|FK008603.1|FK008603
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192317710|gb|FK008602.1|FK008602
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192317710|gb|FK008602.1|FK008602
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151407348|gb|EV277163.1|EV277163
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACCTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151407348|gb|EV277163.1|EV277163
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACCTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|7030299|gb|AW460082.1|AW460082
EST:     CTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298180813|gb|HO022252.1|HO022252
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298180813|gb|HO022252.1|HO022252
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|58016067|gb|CX702809.1|CX702809
EST:     CTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|58016067|gb|CX702809.1|CX702809
EST:     CTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298179762|gb|HO024977.1|HO024977
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298179762|gb|HO024977.1|HO024977
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298176829|gb|HO023302.1|HO023302
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298176829|gb|HO023302.1|HO023302
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298164242|gb|HO013887.1|HO013887
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298164242|gb|HO013887.1|HO013887
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|6847047|gb|AW349337.1|AW349337
EST:     TTTAATCTTCGTCAACGTTACTTTTCCANNNC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: TTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192298857|gb|FG987602.1|FG987602
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192298857|gb|FG987602.1|FG987602
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192297704|gb|FG989594.1|FG989594
EST:     CCTAGCTTCTAG-CACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298194227|gb|HO040875.1|HO040875
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACATAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298194227|gb|HO040875.1|HO040875
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACATAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|38191065|gb|CF920271.1|CF920271
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|38191065|gb|CF920271.1|CF920271
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298163655|gb|HO012388.1|HO012388
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298163655|gb|HO012388.1|HO012388
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|209726947|gb|BW680276.1|BW680276
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|151406805|gb|EV276620.1|EV276620
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151406805|gb|EV276620.1|EV276620
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|18039018|gb|BM307312.1|BM307312
EST:     ACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: ACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|18039018|gb|BM307312.1|BM307312
EST:     ACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: ACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298169572|gb|HO020932.1|HO020932
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298169572|gb|HO020932.1|HO020932
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|213617808|gb|DB959392.1|DB959392
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|213617808|gb|DB959392.1|DB959392
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151411906|gb|EV281717.1|EV281717
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151411906|gb|EV281717.1|EV281717
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192328392|gb|FK020103.1|FK020103
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192328392|gb|FK020103.1|FK020103
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298192922|gb|HO033356.1|HO033356
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298192922|gb|HO033356.1|HO033356
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|9984033|gb|BE658141.1|BE658141
EST:     ATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: ATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|9984033|gb|BE658141.1|BE658141
EST:     ATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: ATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|4288413|gb|AI441329.1|AI441329
EST:     AGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: AGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298185838|gb|HO030999.1|HO030999
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192300181|gb|FG989303.1|FG989303
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192300181|gb|FG989303.1|FG989303
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|6502166|gb|AW203539.1|AW203539
EST:     CTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298190666|gb|HO032787.1|HO032787
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298190666|gb|HO032787.1|HO032787
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|19453348|gb|BM954758.1|BM954758
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|19453348|gb|BM954758.1|BM954758
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298189915|gb|HO038318.1|HO038318
EST:     CAACGTTACTTTTCAACCTCATACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298189915|gb|HO038318.1|HO038318
EST:     CAACGTTACTTTTCAACCTCATACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|151410280|gb|EV280095.1|EV280095
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151410280|gb|EV280095.1|EV280095
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298169734|gb|HO021094.1|HO021094
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298169734|gb|HO021094.1|HO021094
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298196778|gb|HO041521.1|HO041521
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298196778|gb|HO041521.1|HO041521
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|151405553|gb|EV275367.1|EV275367
EST:     CGTCAACGTTACCTTTCCACCTCGTAC                      
genomic: CGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151405553|gb|EV275367.1|EV275367
EST:     CGTCAACGTTACCTTTCCACCTCGTAC                      
genomic: CGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|8826149|gb|BE209809.1|BE209809
EST:     CCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|298184275|gb|HO029488.1|HO029488
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298184275|gb|HO029488.1|HO029488
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|151400953|gb|EV270767.1|EV270767
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151400953|gb|EV270767.1|EV270767
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|298196064|gb|HO044455.1|HO044455
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|298196064|gb|HO044455.1|HO044455
EST:     CAACGTTACTTTTCAACCTCGTACG                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCT
EST: gi|151405812|gb|EV275627.1|EV275627
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151405812|gb|EV275627.1|EV275627
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151399940|gb|EV269811.1|EV269811
EST:     CTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|151399940|gb|EV269811.1|EV269811
EST:     CTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192305829|gb|FG995421.1|FG995421
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192305829|gb|FG995421.1|FG995421
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|193699526|gb|FK639869.1|FK639869
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         AGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... gttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTT
EST: gi|192326830|gb|FK015102.1|FK015102
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg
EST: gi|192326830|gb|FK015102.1|FK015102
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... gttactg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgattcagtgattaatctttgtgggtgattgaatttggctggttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAG
             gattaat  putative branch site (score: 3)
              attaatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttaggctttccctgctttaattctaacatgcactgaaattttacttgattcagtgattaatctttgtgggtgattgaatttggctggttactgcagAGGGATTCAATTGAGAGGGAAAGGGACTGATGGCAGACAACACACAGTCTTACTGGGAAGGCTACAAAGCGTTTTGGTCAGAGAGGTTTTCCTTTTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG