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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATACTGAACCACAAACATGCACCGGGCTGTGGCTGGCCCTAGAAGATGCAAACATATTAAATGGTTGCCTTTGGACAATACCTGGATCTCACAAAAgtatctttttcctaccttttggttcatttcttacctggatcttttatcctttgtttggttcatctaatctaattttttttcctttgcttttttattctgttttctgtag

Basic information

species Glycine max
transcript GLYMA20G02150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g05010.t01 (Vitis vinifera), 5'ss of exon 6
CTTTATACTGAACCACAAACATGCACCGGGCTGTGGCTGGCCCTAGAAGATGCAAACATATTAAATGGTTGCCTTTGGACAATACCTGGATCTCACAAAAgtatctttttcctaccttttggttcat-ttcttacctggatcttttatcctttgtttg-gttcatctaatctaatttttttt--cctttgctt-ttttattctgttttctgtag
|||||||||||||||| ||| ||||| || ||||||||||| |||||||||||||  ||  ||||||||||||| ||| | || |||||||| || ||||||| || | |    ||||  | |||   ||  |   |    | || | |    |   |  | |||   |||   | |  |||  |||| |||| |||| |  ||||| | |   
CTTTATACTGAACCACCAACTTGCACGGGCCTGTGGCTGGCGCTAGAAGATGCAACAATTCTAAATGGTTGCCTCTGGGCCATTCCTGGATCCCATAAAAgtagctatctttc-ccttaagtttctcattaatgtttcttcccttgagcacaaggaagcatgcatgacatcgggtgtaatttaaccttggcttcttttgtggtgtttccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315673|gb|GR825482.1|GR825482
EST:     TGCAAACATATTAAATGGTTGCCTTTGGACAATACCTGGATCTCACAAAA                         ATGGGCTTGTTAGAAGATTCTTAAGAGATGAAGATGGTGTCAAATTCGATC
genomic: TGCAAACATATTAAATGGTTGCCTTTGGACAATACCTGGATCTCACAAAAgtatcttttt ... ttttctgtagATGGGCTTGTTAGAAGATTCTTAAGAGATGAAGATGGTGTCAAATTCGATC
EST: gi|254318745|gb|GR830309.1|GR830309
EST:     TGCAAACATATTAAATGGTTGCCTTTGGACAATACCTGGATCTCACAAAA                         ATGGGCTTGTTAGAAGATTCTTAAGAGATGAAGATGGTGTCAAATTCGATC
genomic: TGCAAACATATTAAATGGTTGCCTTTGGACAATACCTGGATCTCACAAAAgtatcttttt ... ttttctgtagATGGGCTTGTTAGAAGATTCTTAAGAGATGAAGATGGTGTCAAATTCGATC