1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcatgagcttgagagtagcattgttccttctgaattaatcctattattttttaatctattattttttttgtggctggggatgtgctgtgattttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGTTTCAAGTTTGATGCGCTCCTTAGGTTACAAGAGACCTGCAGTCATGCA
species | Glycine max |
transcript | GLYMA20G02150.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACG CTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGEST: gi|207791753|gb|GD763660.1|GD763660
genomic: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACGgtgagctttt ... ttttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAG
EST: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACG CTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGEST: gi|298175802|gb|HO018399.1|HO018399
genomic: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACGgtgagctttt ... ttttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAG
EST: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACG CTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGEST: gi|254315673|gb|GR825482.1|GR825482
genomic: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACGgtgagctttt ... ttttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAG
EST: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACG CTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGEST: gi|254318745|gb|GR830309.1|GR830309
genomic: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACGgtgagctttt ... ttttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAG
EST: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACG CTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAG
genomic: TGGTAAGTTAAAGCAGCCGAAGCAATTGTCCCTTAATAAAGTTGGCCACGgtgagctttt ... ttttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAG
attttttaatctattattttttttgtggctggggatgtgctgtgattttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGTTTCAAGTTTGATGCGCTCCTTAGGTTACAAGAGACCTGCAGTCATGCA
ttttaat putative branch site (score: 3)
ttaatctattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgagcttgagagtagcattgttccttctgaattaatcctattattttttaatctattattttttttgtggctggggatgtgctgtgattttgtgcagCTCTTCATGAGATTGAGCCAGCATTCAAAAAGTTTTCTTCTTCTGAGAAAGTTTCAAGTTTGATGCGCTCCTTAGGTTACAAGAGACCTGCAGTCATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
gcatgag
- - - - - - - - - - - - -ccttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtga