Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCAATGCAGTTGCTGTTGCTGGCTATCTCAATGCTACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgttatgctatcaattttagcttttcaggactaggaaaatctagtgttttatgttggcataagattaacacatattagactgttaattcaatt...

Basic information

species Glycine max
transcript GLYMA20G02130.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G094771_T01 (Zea mays), 5'ss of exon 4
GTATGCAATGCAGTTGCTGTTGCTGGCTATCTCAATGCTACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgttatgctatcaattttagcttttcaggactaggaaaatctagtgttttatgttggcataagattaacacatattagactgttaattcaatt--
 | ||||||||||||||||||||||||| ||| ||||| || |||||| |||| ||||| |||||||| ||||| ||||  ||||| ||||  |||  |    ||    | |   |  ||| | |         ||    | | |  | | | |||   |  ||  | | |   | | | ||     ||  
ATTTGCAATGCAGTTGCTGTTGCTGGCTTTCTGAATGCGACTCTTGTAATCCCAAACTTCCATTATCACAGCATTTGGAGGGATCCTAGgt--gttcctccctctcctgagtcctgacttttatgtgccctttcattgtctatgtattctcgtcattgcaccaatccttgtgttaatctaaagaatgttga

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G14970.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATGCAATGCAGTTGCTGTTGCTGGCTATCTCAATGCTACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttg-----gtttgttatgctatcaattt-tagcttttcaggactaggaaaatctagtgttttatgttggcataagattaacacatattagactgttaattcaatt
 |||||||||| |||||||| || ||||| || ||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||| |||||       |||||| |  ||||   |  | |  ||  |    || | ||| | |    |   ||||   |  |  ||  |  | |  ||  | |   | ||   
ATATGCAATGCGGTTGCTGTGGCAGGCTACCTTAATGCGACCCTTGTAATTCCCAACTTTCACTATCACAGCATATGGAAAGATCCGAGgtttcggatatttgttttcttatcttctcctggtgttataaatttaagcaaagcca----tccctgtttcaactacttt--ctgaaaaaaggttttccttgcag--

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G01480.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATGCAATGCAGTTGCTGTTGCTGGCTATCTCAATGCTACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgttatgctatcaattttagcttttcaggactaggaaaatctag--tgttttatgttggcataagattaacacatattagactgttaattcaatt
 |||||||||| |||||||| || || ||||| ||||| || || ||| | ||||||||||| ||||| |||||||||| |||||| ||||   |||    |||| ||   |  |  | ||   |  |  | ||||| |     | || ||| |         | ||| |  ||   || | |        
ATATGCAATGCGGTTGCTGTGGCAGGATATCTTAATGCAACTCTAGTAATTCCCAACTTTCACTATCACAGCATATGGAGAGATCCAAGgt---tttagattgctttcttctgaaaatctt---gtttgtgcaaatcaaagccatcttttgtagattgctttctgacagaggtttttctttcag-------

upper sequence: GLYMA20G02130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g05000.t01 (Vitis vinifera), 5'ss of exon 4
GTATGCAATGCAGTTGCTGTTGCTGGCTATCTCAATGCTACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgttatgctatcaattttagcttttcaggactaggaaaatctagtgtt-ttatgttggcataagattaacacatatta-gactgttaattcaatt
 || |||||||||||||||| || |||||||| ||||| || ||| || ||||| | ||||||||||||||||| |||| |||||||||||  |||  |  |   ||   | ||   | ||  |     | | |  | |  | |  |    | |  |||||   | | |||  |  ||| || |    |  
ATAGGCAATGCAGTTGCTGTGGCGGGCTATCTTAATGCAACACTTATAATCCCCCATTTTCATTATCATAGCATTTGGAGAGATCCCAGgtgtgttgatattttcatttttcttcaatattttgtttgtgcagagccaatcggtactgcacttgtttaagaactataaataccacaacttttgaactga--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12490081|gb|BG043602.1|BG043602
EST:     ACCCTTGTATTCCCCAACTTTCATTA-CATAGCATATGGAAAGATCCCAG                         CAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAA
genomic: ACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgt ... atgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAA