Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcttggttgcagggaatttcttgatgtttttaatgattttgatcaaggtattcattttgaaataatctaaactgatctataatgtttcatgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAATGATGTACGGGTGGTTGACAAGATTCCTGAGTACCTAATGGAAAGATTT

Basic information

species Glycine max
transcript GLYMA20G02130.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G01480.1 (Arabidopsis thaliana), 3'ss of exon 4
tttcttggttgcagggaatttcttgatgtttttaatgattttgatcaaggtattcattttgaaataatctaaactgatctataatgtttcatgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAATGATGTACGGGTGGTTGACAAGATTCCTGAGTACCTAATGGAAAGATTT
 || | | ||||      | |  |||   | ||  |  |    ||||| |   || |||  | ||    |   ||||   |   | ||       | ||| |||||   ||| || || ||||||||||| ||||||| ||||||   ||||||||| ||||||||||| |  |||||||| || ||||||||  | |||
gttttagattgctt----tcttctgaaaatcttgtttgtgcaaatcaaagccatcttttgtagattgcttt--ctgacagaggtttttct-----ttcagTAAATTTGGGGACATCTACGATGAAGAGTTCTTTGTCAGTACCTTATCAAATGATGTGCGGGTGGTTGATACAATTCCTGAATATCTAATGGAGCGTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12490081|gb|BG043602.1|BG043602
EST:     ACCCTTGTATTCCCCAACTTTCATTA-CATAGCATATGGAAAGATCCCAG                         CAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAA
genomic: ACCCTTGTATTCCCCAACTTTCATTATCATAGCATATGGAAAGATCCCAGgttggtttgt ... atgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggtattcattttgaaataatctaaactgatctataatgtttcatgtgtccagCAAATTCCAGGATATTTATGATGAAGAGTTTTTTGTCAATACCTTGAAAAATGATGTACGGGTGGTTGACAAGATTCCTGAGTACCTAATGGAAAGATTT
                          aactgat  putative branch site (score: 3)
     tattcattttgaaata  TA-rich tract