Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaacaaaaatattaaaatgacataaacatgtttattataacttctctcaaaacgaaggcaggggaggattgactaactcatggaaataaatgcatgcagAGCATAAGGAAACCAAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTATGTGTGTCATCATCTCTACCCTCTTGGTTTTTGCAATTAAGGCTCAAAATC

Basic information

species Glycine max
transcript GLYMA20G02080.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02080.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0011g04980.t01 (Vitis vinifera), 3'ss of exon 5
caaacaaaaatattaaaatgacataaacatgtttattataacttctctcaaaacg---aaggcaggggaggattgactaactcatg--gaaataaatgca-tgcagAGCATAAGGAAACCAAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTATGTGTGTCATCATCTCTACCCTCTTGGTTTTTGCAATTAAGGCTCAAAATC
    || |    | |   ||| | ||||  ||   ||   | |    | ||| |    | || |   ||| ||   | || | ||   | | |   |||| |||||||||| | ||||||||| || |||||||||||||| ||||||||||||   | |||||||||||| ||||| |||||||| ||| | || |||||| |||
----catactcctaagtctgata-aaacccgtcggtttggattctaattaaagcttccatggtatttgagaat-accaaattgatattggattgtgtgcaatgcagAGCATGAAGAAACCAAATCTGTTCTGGGTCTCAGCCGGAGCTCCTCTTGCTTCTGTCATCATCTCGACCCTATTGGTTTTCGCATTCAAAGCTCAACATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaaaacgaaggcaggggaggattgactaactcatggaaataaatgcatgcagAGCATAAGGAAACCAAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTATGTGTGTCATCATCTCTACCCTCTTGGTTTTTGCAATTAAGGCTCAAAATC
                          gactaac  putative branch site (score: 1)
                                       aaataaat  TA-rich tract