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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTCCCTATTCTCCAATGGGGTCCTAAGTATAATCTCAAACTCTTCAAATCTGACCTTGTTTCTGGCCTCACTATTGCTAGCTTGGCCATCCCGCAGgttttgtcaagttctcactctgcctcttttctttttttgttacaaagtacaacacttatattcttcattggagacaatctgctcgaacttgttctcgcataaaaaatgttcacccatatttttaacttggttttcttattcaactattgacttttgtcattcag

Basic information

species Glycine max
transcript GLYMA20G02080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g04980.t01 (Vitis vinifera), 5'ss of exon 1
TGTGTTCCCTATTCTCCAATGGGGTCCTAAGTATAATCTCAAACTCTTCAAATCTGACCTTGTTTCTGGCCTCACTATTGCTAGCTTGGCCATCCCGCAGgttttgtcaagttctcactctgcctcttttctttt-tttgttacaaagtacaacacttatattcttcattggagacaatctgctcgaacttgttctcgcataaaaaatgttcacccatatttttaacttggttttcttattcaactattgacttttgtcattcag
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TGTTTTTCCTATCCTTCAATGGGGTCCCAACTACAGTCTCAAACTCTTCAAATCTGACATCGTTTCTGGCCTCACCATTGCCAGCTTAGCCATTCCTCAGgttttcctca---tccatttcatttcccttctcatgcttctcatcaatttatgcatactcatttcacttc----tcaacttctttaatttgggttcttcgtcag-------------------------------------------------------------