Sequence
atgc intronic sequence ATGC exonic sequenceTTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtatagtaattcaagagctgaatactacaatattttttaatcatgcttttaaactgctatgaattggatagtgttgtcagcagaaagaattgataagcct...
Basic information
species | Glycine max |
transcript | GLYMA19G36910.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36910.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G36840.1 (Arabidopsis thaliana), 5'ss of exon 4
TTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtat-----agtaattcaagagctg-----aatactacaa-----tattttttaatcatgcttttaaactgctatgaattggatagt-gttgtcagcagaaagaattgataagcct
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CTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTGTCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCAGgtttgtgcaagtctttaatgggttttttctgacccttcaaattcatatgctttgcttaaaccttgcgactgttatttacatgagactcgttttctcaaatcttatttgatgatcag
upper sequence: GLYMA19G36910.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g04890.t01 (Vitis vinifera), 5'ss of exon 4
TTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtatagtaattcaagagctgaatactacaatattttttaatcatgcttttaaactgctatgaattggatagtgttgtcagcagaaa-gaattgataagcct
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TTCCCTCAGTCCCGCTCACACTCTTGTCCAAATTGTCTGCCAAGATCACAAAGGTCTCCTTTACGACATGATGAGAACTCTAAAGGATTACAATATCAAGgtacattacgtctataatccaat-ttgagaaaagatataatgaaatactgcaagtgtcagttattcatccatgaaataataatatttgaatacacttacccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15664956|gb|BI702327.1|BI702327EST: AAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAG ATTTCTTATGGGAGATTCTCAACAAAACCCAGAGGAAAATGCGAGCTTGAC
genomic: AAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtatagtaat ... atttaaacagATTTCTTATGGGAGATTCTCAACAAAACCCAGAGGAAAATGCGAGCTTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGgtatagtaattcaagagctgaatactacaatattttttaatcatgcttttaaactgctatgaattggatagtgttgtcagcagaaagaattgataagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG