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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaggttaattttctgatgtatactgtgcacttgattacaatttcatgtgtttactatactaactaacttattgcttaatcttgtatacatatgatcagGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGC

Basic information

species Glycine max
transcript GLYMA19G36910.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36910.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os09g39740.1 (Oryza sativa), 3'ss of exon 3
tggaggttaattttctgatgtatactgtgcacttgattacaatttcatgt----gtttactatactaactaacttattgcttaatcttgtatacatatga--tcagGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGC
       |   ||| ||    ||| | | ||| |  ||   || | ||||    | | |  |  || |   |  |  |   | |    || | || ||||  ||||||||||||||||||||||||  |||||||| || ||   |||  |  |      | |||| || ||  |||| |  | |  ||| || ||||  | |   
-----cctttgtttgtgcaaaataatcttcacgtcctttttatgtaatgtaaatgatcaaaactctcatgcatgttatatcttacgacgtttgca-atgacctcagGGAACTTCTACATACAAAGAGCAGAAGGGAAGAGACCTATGACAAACTTCAGAGTGTTTTAGGTGACTCCTTGACAAGCTGTGAAATAGAATCTGCTACG

upper sequence: GLYMA19G36910.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g04890.t01 (Vitis vinifera), 3'ss of exon 3
----tggaggttaattttctgatgtatactgtgcacttgattacaatttcatgtgtttactatactaactaacttattgcttaatcttgtatacatatgatcagGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGC
    |  ||  |  ||   |  ||| || ||   | | |  |    |||  | ||||   | |  |  | || ||| || ||  | || | |  || |  |||| ||||||||||||||||||||||||  ||| || |||  | | || ||   | || || |||| ||| || | || |    ||||||     ||||||||
aaagtcaagaattcttcggtactgt-tagtgaaaaatgggcttatgtttattatgtt-gttctggttccaaatttaatgttt--ttttttttttatcttgtcagAGAACTTCTACATACAAAGAAGAGACAGGAGGATACACATAACCATTTAAAAACTGTTCTGGGAGATGCCATGATAAGTTGTGACATAAGTATGGTTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtgtttactatactaactaacttattgcttaatcttgtatacatatgatcagGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGC
      tttactata  TA-rich tract