1 5' 3' | 2 5' 3' | 3 5' 3' |
...atatatgatgaattgttattagatgattgtggaaaatttaccgtgaaaatttataattatttttctctaataatatatagtcactttttatttgtgtcagATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGGTGCAACATTTCCTCTGAGGCCAATGTGGCTATATGGTTCAATATGGGATGCA
species | Glycine max |
transcript | GLYMA19G36870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCCAAGATTTTCATCACTATGCTATACTGTGGAGTCCCAAGGAAATAAT ATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGGTGCEST: gi|9565812|gb|BE475321.1|BE475321
genomic: ACCCAAGATTTTCATCACTATGCTATACTGTGGAGTCCCAAGGAAATAATgtaagtcact ... tttgtgtcagATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGGTGC
EST: ACCAAAGATTTTCATCACTATGCTATACTGTGGAGTCCTAAGGAAATAAT ATTCCTAGTGGATGATGTGCCAATTAGGAGGTACCCGAGGAAGAGTGGTGC
genomic: ACCCAAGATTTTCATCACTATGCTATACTGTGGAGTCCCAAGGAAATAATgtaagtcact ... tttgtgtcagATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGGTGC
aaaatttataattatttttctctaataatatatagtcactttttatttgtgtcagATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGGTGCAACATTTCCTCTGAGGCCAATGTGGCTATATGGTTCAATATGGGATGCA
ctctaat putative branch site (score: 3)
ctttttattt putative PPT
ttataattatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatatgatgaattgttattagatgattgtggaaaatttaccgtgaaaatttataattatttttctctaataatatatagtcactttttatttgtgtcagATTCCTAGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGGTGCAACATTTCCTCTGAGGCCAATGTGGCTATATGGTTCAATATGGGATGCA
- - - - - - - - - - - - gattgtg
- - - - - - - - - - - - - - - - - - - taccgtg