1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctgaatctgatcactttcaatgctctctttctctttcacttgcataatatcattgaaatttattaatccacttccacttttttgtttctgataaacagGAAGTGGCTTCAAGTCAGTAAGGCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGGTCCAACCTGGCTACACTGCAGGTGTTATAACAGCTTTCTA
species | Glycine max |
transcript | GLYMA19G36870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGCCTAGACCAAAATGCATTAACAATCTGGCTTGATAGAACCTCAG GAAGTGGATTCAAGTCAGTAAGGCCATTTCGATCCGGGTACTTTGGTGCTT
genomic: CCAAAGTCTAGACCAAAATGCATTAACAATCTGGCTTGATAGAACCTCAGgtctgaatct ... tgataaacagGAAGTGGCTTCAAGTCAGTAAGGCCATTTCGATCCGGGTACTTTGGTGCTT
ataatatcattgaaatttattaatccacttccacttttttgtttctgataaacagGAAGTGGCTTCAAGTCAGTAAGGCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGGTCCAACCTGGCTACACTGCAGGTGTTATAACAGCTTTCTA
tccacttccacttttt CT-rich tract
atcattgaaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgaatctgatcactttcaatgctctctttctctttcacttgcataatatcattgaaatttattaatccacttccacttttttgtttctgataaacagGAAGTGGCTTCAAGTCAGTAAGGCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGGTCCAACCTGGCTACACTGCAGGTGTTATAACAGCTTTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG