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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGTgtaagcctggatctattgtggaaatttatttttacattacatctaaagtctattttctttctttcttttgggtgttgaaatggttggttgtcttttggtttctatgtgaaag

Basic information

species Glycine max
transcript GLYMA19G36460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02090.t01 (Vitis vinifera), 5'ss of exon 5
GCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGTgtaagcctggatctattgtggaaatttatttttacattacatctaaagtctattttctttctttcttttgggtgttgaaa---tggttggttgtct--tttggtttctatgtgaaag
||||| ||| ||||||||||| ||||| ||||| ||| |||||||||| || || |||||||| ||||||||| |||| || || | |||||||||||||            |  | ||||  ||  |||||   ||      |  | |  |    |  | |   ||| || ||   | ||    | | |  |||| | | | |   | ||
GCATTATCAAAAAGGTCTCCGTCTAGACCCAGAACATGGTGAACTGAAGAAAGCGTATTTTGGTTTGAAAAATTTACTGAAGAAAACTAAAAGTgtaagctcaa--------taaacattttcttacacattgtgtcgctcaccattatcatgcagtaatataatgtggtgcaaccttcgtcaagtatttaatttgatctgttttatacag