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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcttgtggaaatgatattcaaatccttctttttttatatacaatctatcttatatgcgaacatatatattcagGCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGT

Basic information

species Glycine max
transcript GLYMA19G36460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36460.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0040g02090.t01 (Vitis vinifera), 3'ss of exon 4
------------gtttgtcttgtggaaatgatattcaaatccttctttt--tttatatacaat-ctatcttatatgcgaacatatatattcagGCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGT
              || |||||| |||||   ||     || || |  |  ||  |    | | ||||     |     || | |  ||| ||||||| ||| ||||||||||| ||||| ||||| ||| |||||||||| || || |||||||| ||||||||| |||| || || | |||||||
gtttatttaacaacttatcttgttgaaatctcatgattctcattgtaataattggtccctactactattgctcacatagacttttcaatttagGCATTATCAAAAAGGTCTCCGTCTAGACCCAGAACATGGTGAACTGAAGAAAGCGTATTTTGGTTTGAAAAATTTACTGAAGAAAACTAAAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatccttctttttttatatacaatctatcttatatgcgaacatatatattcagGCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGT
       ttctttttttatatac  TA-rich tract