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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCGTGGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttacttttttattctttgctccttataatctagattctagtgataatgtgttacgaaatctcctatttgtgagggtgtattcaaggcagatttgt...

Basic information

species Glycine max
transcript GLYMA19G36330.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256037|gb|BQ452925.1|BQ452925
EST:     GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCATGTTCAATTTAGAG                         GGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
EST: gi|19270643|gb|BM886899.1|BM886899
EST:     GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAG                         GGAAGTTGCGAAGCACTTAATAGATCAT
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAAGTTGCGAAGCACTTAATAGATCAT
EST: gi|23053002|gb|BU577493.1|BU577493
EST:     GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAG                         GGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
EST: gi|14011200|gb|BG726122.1|BG726122
EST:     GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAG                         GGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
EST: gi|19936989|gb|BQ081099.1|BQ081099
EST:     GGTTTTCCTATCCTAACCGTACTGCTATTCCTCGCAGGTTCAATTTAAAG                         GGAAAGT-GCGAAGCACTTAAT
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAA-GTTGCGAAGCACTTAAT
EST: gi|19937249|gb|BQ081215.1|BQ081215
EST:     GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAAGTTCAATTTAGAG                         GGAAGTTGCGAAGCAACT-AATAGATCATGC
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAAGTTGCGAAGCA-CTTAATAGATCATGC
EST: gi|16348193|gb|BI973788.1|BI973788
EST:     GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAG                         GGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG
genomic: GGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttact ... tgggattcagGGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCGTGGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGgtatgttacttttttattctttgctccttataatctagattctagtgataatgtgttacgaaatctcctatttgtgagggtgtattcaaggcagatttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaggg