Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtccttccatccctcacatgccaatttcgtttcaacatttttctgcattttatcacttttgacctaacttctgctctattttttccattctctatt...

Basic information

species Glycine max
transcript GLYMA19G36330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165262|gb|HO011311.1|HO011311
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|21256037|gb|BQ452925.1|BQ452925
EST:     CGCCTGTCTCGGACAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|19270643|gb|BM886899.1|BM886899
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|23053002|gb|BU577493.1|BU577493
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|4396660|gb|AI495657.1|AI495657
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|13125627|gb|BG316197.1|BG316197
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|19936989|gb|BQ081099.1|BQ081099
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|19937249|gb|BQ081215.1|BQ081215
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
EST: gi|16348193|gb|BI973788.1|BI973788
EST:     CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTT                         GTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA
genomic: CGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtcctt ... catgggctagGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTgtgagtccttccatccctcacatgccaatttcgtttcaacatttttctgcattttatcacttttgacctaacttctgctctattttttccattctctatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatccc