Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAACTGTCCTTCGTATTTGTTGCGCAATCTGAAGGAACTTGGATTTAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTCTACAAgtacggattttctgtctgggctataattgttttgcatttacagatataactgaagtttgatcatgattttgtatgcatattatgttgtccttcagttaggcttaggcattaacataatgttgttttcgctgctgtattccttcaattgtttgggtag

Basic information

species Glycine max
transcript GLYMA19G36300.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36300.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g45360.1 (Oryza sativa), 5'ss of exon 4
ATATAACTGTCCTTCGTATTTGTTGCGCAATCTGAAGGAACTTGGATTTAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTCTACAAgtacggattttctgtctgggctataattgttttgcatttacagat--ataactgaagtttgatcatgattttgtatgcatattatgttgtccttcagttaggcttaggcattaacataatgttgttttcgctgctgtattccttcaattgtttgggtag
 |||   ||    || |||||| |  | ||  ||    |||||||||||  |||||| |||||||||||||||||||| |||||| | ||||||   |||  |   || || ||  | |   ||  |||| |   ||  |||  | || |  |||||  | | | |  | |||    | | || | |  |||||                                                              
GTATGGTTGCGACTCATATTTGGTTGGAAACTTGTCAAAACTTGGATTTCAAGAACCTACACCTATCCAAAGGCAGGCCATTCCAATTCTTCTATCCgta-agtcattttgactctgtttggatatttttccccctagtgattgaaaattttagtttt-ttagggtcatatatctgaaat-tgctttgtttcag--------------------------------------------------------------

upper sequence: GLYMA19G36300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02300.t01 (Vitis vinifera), 5'ss of exon 5
ATATAACTGTCCTTCGTATTTGTTGCGCAATCTGAAGGAACTTGGATTTAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTCTACAAgtacggattttctgtctgggctataattgttttgcatttacagatataactgaagtttgatcatgattttgtatgcatattatgttgtccttcagttaggcttaggcattaacataatgttgttttcgctgctgtattccttcaattgtttgggtag
||||   |||   || ||||| |||| |||  ||  |||||||||||||| ||| |||||||| || ||||| ||||||||||||||||| |||   ||| || | |||  | |  ||||   ||  |||   | | |   ||   ||    |    |||   |    || |   |||  ||| |||   |  | || ||                                                      
ATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTgtatgg-tcttccatttatgctaactttactttagttcttc--ttacttcttccatccagtcaccctcccctaggtgcattgggttatcccaaaaattggatt------------------------------------------------------