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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccccctaaagtgtaatctcatgtgaaatgggtattcttgtgcctctagaaactagaatgtttatttgataaacatttaagaaattcattttcattattattttcttttattgcagGGGGTGATACGGATCACTTTATTTTGCTTATCAACTGCTGTAAGAATTTTTATTATATTTTGTAAGTTAGTTTTTGCCCAAAGCGGTTATTTTGATATGC

Basic information

species Glycine max
transcript GLYMA19G36300.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6071387|gb|AW100774.1|AW100774
EST:     TTGCCTAAATTTAAACCATGATTGTCGTCATATACTCCTCAGCCCTCACT                         GGGGTGATACGGATCACTTTATTTTGCTTATCAACTGCTGTAAGAATTTTT
genomic: TTGCCTAAATTTAAACCATGATTGTCGTCATATACTCCTCAGCCCTCACTgtaagccccc ... tttattgcagGGGGTGATACGGATCACTTTATTTTGCTTATCAACTGCTGTAAGAATTTTT
EST: gi|14195898|gb|BE819893.2|BE819893
EST:     TTGCCTAAATTTAAACCATGATTGTCGTCATATACTCCTCAGCCCTCACT                         GGGGTGATACGGATCACTTTATTTTGCTTATCAACTGCTGTAAGAATTTTT
genomic: TTGCCTAAATTTAAACCATGATTGTCGTCATATACTCCTCAGCCCTCACTgtaagccccc ... tttattgcagGGGGTGATACGGATCACTTTATTTTGCTTATCAACTGCTGTAAGAATTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgataaacatttaagaaattcattttcattattattttcttttattgcagGGGGTGATACGGATCACTTTATTTTGCTTATCAACTGCTGTAAGAATTTTTATTATATTTTGTAAGTTAGTTTTTGCCCAAAGCGGTTATTTTGATATGC
  atttgat  putative branch site (score: 5)
                           ttttcattattatttt  putative PPT
             atttaagaaattcatt  TA-rich tract