1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTACTGATGTAGTTGCCCGTGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTGgtacgtgcagttatattaatgttgttttagatttgggaaaagatatttatagggattataatttatattattctctcatggagcctctcgattgctagatcactcaattattattattatttgctaatagaaaatgttgatttttcattag
species | Glycine max |
transcript | GLYMA19G36300.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTG GTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAGEST: gi|7925501|gb|AW831527.1|AW831527
genomic: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTGgtacgtgcag ... ttttcattagGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAG
EST: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTG GTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAGEST: gi|16344585|gb|BI970180.1|BI970180
genomic: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTGgtacgtgcag ... ttttcattagGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAG
EST: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTG GTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAGEST: gi|298171686|gb|HO021278.1|HO021278
genomic: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTGgtacgtgcag ... ttttcattagGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAG
EST: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTG GTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAG
genomic: GATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTGgtacgtgcag ... ttttcattagGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACTGATGTAGTTGCCCGTGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCCGATTCTGCTGCTGCTTATGTCCACAGAATTGgtacgtgcagttatattaatgttgttttagatttgggaaaagatatttatagggattataatttatattattctctcatggagcctctcgattgctagatcactcaattattattattatttgctaatagaaaatgttgatttttcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT