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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTCCAAAGCAAGGAGCGTGCCAAGGAGCTGTACAGTGAACTTGCATTTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAGgtagttctcaacccctttgaacaacataagatatttattggaaaataagaaaatatgaaacgtttcccctccccaccaaaataaaaaagaaaactgataa...

Basic information

species Glycine max
transcript GLYMA19G36300.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36300.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G083580_T01 (Zea mays), 5'ss of exon 9
TTTTCTCCAAAGCAAGGAGCGTGCCAAGGAGCTGTACAGTGAACTTGCATTTGACAACATTAGAGTTGATGTTATCCATTCTGATTT--GTCTCAAGCAGAGgtagttctcaacccctttgaacaacataagatatttattggaaaataagaaaatatgaaacgtttcccctccccaccaaaataaaaaagaaaactgataa---------------------
|||| |||||||||| ||| | ||||| ||||| ||||  ||||| ||||||||  |||||||||||||||| || ||| | ||| |  ||    |||||   ||| | |  |     |||  ||     | || || |  |  |  |   |   | ||  |   || | || |      |   |       |   ||  ||                     
TTTTGTCCAAAGCAAAGAGAGGGCCAAAGAGCTTTACAAAGAACTGGCATTTGATGACATTAGAGTTGATGTAATTCATGCAGATCTCAGTGAGCAGCAGgtatagctttgcatattattgt-cactgctatat-ttcagagacatctttcatgttttgttagagttgcgctacttgtgtatg-aggtttacatgttgtcaacatatgtttcctttactgcag

upper sequence: GLYMA19G36300.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0040g02300.t01 (Vitis vinifera), 5'ss of exon 10
TTTTCTCCAAAGCAAGGAGCGTGCCAAGGAGCTGTACAGTGAACTTGCATTTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAGgtagttc----tcaaccc--------ctttgaacaacataagatatttattggaaaataagaaaatatgaaacgtttcccctccccaccaaaataaaaaagaaaactgataa
 ||| ||||||||||||| ||||| |||||||| ||||  ||||| ||||||||  ||||||||||||||||||||||| |||||||||| ||| || ||||| ||     ||||           |||  | |||  ||   | |||        | || || | || || |        |  |   || ||    | |            
CTTTGTCCAAAGCAAGGAACGTGCAAAGGAGCTCTACACGGAACTGGCATTTGATGACATTAGAGTTGATGTTATCCATGCTGATTTGTCCCAATCACAGgtaattacttgtcaatttggtatatacttctaccaatgtattctttttgcctatccagaaaaagagataaacctcgagtgttagctgtcagaacttgata------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925501|gb|AW831527.1|AW831527
EST:     TTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAG                         CGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATT
genomic: TTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAGgtagttctca ... ttgtgtatagCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATT
EST: gi|16344585|gb|BI970180.1|BI970180
EST:     TTGNNNNNATTAGAGTTGATGTTATCCATTCTGATTNNNCTCAAGCAGAG                         CGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATT
genomic: TTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAGgtagttctca ... ttgtgtatagCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATT
EST: gi|298171686|gb|HO021278.1|HO021278
EST:     TTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAG                         CGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTCTGATT
genomic: TTGACAACATTAGAGTTGATGTTATCCATTCTGATTTGTCTCAAGCAGAGgtagttctca ... ttgtgtatagCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATT