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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatgatttttgaattattaagctaatgcatttaagaatatataattattttttctctaattttctgattgaatgtcccttctcttatgatcaatcacactataatatattcgcatgcttgttcagGGATTGAATATCTTCACACGGGTTGTGTTCCTGTCGTTATCCACAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAGAGCCAAGGTCTC

Basic information

species Glycine max
transcript GLYMA19G36210.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408097|gb|EV277905.1|EV277905
EST:     GAGTATCAATTGGATTAAGCGCCTTGAGATTGCAGAAGATGCTGCCAAAG                         GGATTGAATATCTTCACACGGGTTGTGTTCCTGTCGTTATCCACAGAGACT
genomic: GAGTATCAATTGGATTAAGCGCCTTGAGATTGCAGAAGATGCTGCCAAAGgtttatgatt ... gcttgttcagGGATTGAATATCTTCACACGGGTTGTGTTCCTGTCGTTATCCACAGAGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtcccttctcttatgatcaatcacactataatatattcgcatgcttgttcagGGATTGAATATCTTCACACGGGTTGTGTTCCTGTCGTTATCCACAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAGAGCCAAGGTCTC
                                              cttgttc  CT-rich tract
                         acactataatatatt  TA-rich tract