1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gccctcttttgtttctaaataaagcataaagtagataaaatagttgcaattttcttactaaattctattgtaattgaattgatgtttttctttgatccagGTTACTCTTCTTTCAAGAATACACCACAGAAATTTGGTGCAGCTGCTTGGTTATTGTCGAGATGAAGAGAATAGTATGCTTGTTTATGAGTTCATGCATA
species | Glycine max |
transcript | GLYMA19G36210.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGTTTTAACCAGTAATTCCTATCAAGGCAAGCGAGAGTTCTCAAACGAG GTTACTCTTCTTTCAAGAATACACCACAGAAATTTGGTGCAGCTGCTTGGT
genomic: AAGTTTTAACCAGTAATTCCTATCAAGGCAAGCGAGAGTTCTCAAACGAGgtaacctgca ... tttgatccagGTTACTCTTCTTTCAAGAATACACCACAGAAATTTGGTGCAGCTGCTTGGT
gcaattttcttactaaattctattgtaattgaattgatgtttttctttgatccagGTTACTCTTCTTTCAAGAATACACCACAGAAATTTGGTGCAGCTGCTTGGTTATTGTCGAGATGAAGAGAATAGTATGCTTGTTTATGAGTTCATGCATA
tttttctttgatcc CT-rich tract
taaattctattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctcttttgtttctaaataaagcataaagtagataaaatagttgcaattttcttactaaattctattgtaattgaattgatgtttttctttgatccagGTTACTCTTCTTTCAAGAATACACCACAGAAATTTGGTGCAGCTGCTTGGTTATTGTCGAGATGAAGAGAATAGTATGCTTGTTTATGAGTTCATGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-ccctctt
- - - - - - - - aaataaa
- - - - - - - - - - - - - - - - agataaaa
- - - - - - - - - - - - - - - - - - - - -agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt