Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192315420|gb|FK009656.1|FK009656EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
EST:
gi|19348411|gb|BM892943.1|BM892943EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
EST:
gi|31308246|gb|CD393449.1|CD393449EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
EST:
gi|151407002|gb|EV276817.1|EV276817EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
EST:
gi|192297288|gb|FG992397.1|FG992397EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACGGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
EST:
gi|17022550|gb|BM093584.1|BM093584EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
EST:
gi|151398588|gb|EV268459.1|EV268459EST: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGG GTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
genomic: CAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgttt ... aatgtctcagGTGATAAATCTTCAACAGACTGGGACAAGGCATGGTCAAAATTCAAAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCCAATGCTCATCACTTTCTTCTTATTCTCCTTTCAAGCTTGTCTGTTCCAACAGAGACTCCAAGGAATCTCAACGAAACGACGATAACAATAACAAGGgtatttgtttttccatacttctcttattattatttgatgatagtctttgtcttcttatgaatttatttaatgttgcttttggagttctttgcgacttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA