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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtcataatgttgactggcaagcaccatacaagttttgtattatttattcacttctcagatgtgtattatagcattcatttgcacaatttcttgtgcagGATTTGCTTAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAA

Basic information

species Glycine max
transcript GLYMA19G36140.4
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36140.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g17634.1 (Oryza sativa), 3'ss of exon 3
--tggtcataatgttgactggcaagcaccatacaagttt-tgtattatttattcacttctcagatgtgtattatagcattcatttgcacaatttcttgtgcagGATTTGCTTAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACA--CGTTAAATCTATATCAAA
  | |  | | |  ||  |  | |      |  |   |  ||    | | |||||  |    || ||  |   |  |  |||| |     | |||| |||||||   | |||  | | ||||| ||||||||| | ||||| |||||||| || |||||||||||| |||||    | |||||||    || | |||| |     
aatagagagattactgtttcaccaattatttgtagactaatgctacactaattcaggtag-ggaggttcagcctt-ctctcatgtctgtgacttct-gtgcagGGGCTTCTTGCTGATAAGATTACTCCAAATGTCTATGTCTTCAACAGCCTTATGAATGTGAATGCCCATAGCTTCAGCTACAACTTTTCAGTCTACAAGC--

upper sequence: GLYMA19G36140.3 (Glycine max), 3'ss of exon 5
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 3'ss of exon 3
---------tggtcataatgttgactggc--aagcaccatacaagttttgtattatttattcacttctcagatgtgtattatagcattcatttgcacaatttcttgtgcagGATTTGCTTAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAA
         |  | ||| |||    | ||  ||| | | |  | | |   | || | |   ||     ||  || |  || |||  || |||  || |||||  || ||||||| | || ||  |||| || |  |||||||| |||||  | |||||||| |||||||| ||||||||||||||| | |||||  ||||  ||||  | |
gtaattccctaattatactgtatttttgcgtaagtatcctttacgctcgattttgtctgc-catcctgcatttgagatttgtag--ttaatt--cataattttgtg-gcagGATCTTCTCAAAGAAAACATTAAGCCAAATATTTATGTTATTAACAGTCTAATGAATGTTAATTCCCATGATCTTGGGTACACACTAAAAGTATACAAGA

upper sequence: GLYMA19G36140.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g03240.t01 (Vitis vinifera), 3'ss of exon 3
tggtcataatgttgactggcaagcaccatacaagttt-tgtattatttattcacttctcagatgtgtattatagcattcatttgcacaatt--tcttg-tgcagGATTTGCTTAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAA
    ||  |     | ||   |      |   | |||    | || |||     |       |   | |  |||  |   ||   ||| ||  || || | ||||| || |||  ||| |||||||| |||||||| || || ||||||||||||||||||||||||  ||||||| | || ||||| || ||| | ||  | |
----caatacacaaaatgtgtaattttgtgttattttgcaaaataattagatgttctatgcttccttttcttaggttcgtttcttacagttgatcctgctacagGAGTTACTTGCTCAGAAGATCACCCCAAATATTTACGTTTTCAACAGTCTCATGAATGTGAATGTCCATGATTTGAGTTACACATTCAATGTCTACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcacttctcagatgtgtattatagcattcatttgcacaatttcttgtgcagGATTTGCTTAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAA
                                           tttcttgt  CT-rich tract
                  tgtattata  TA-rich tract