Sequence
atgc intronic sequence ATGC exonic sequence...taaaaaataatggaaattacaactttcttgtgatcctggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGT
Basic information
species | Glycine max |
transcript | GLYMA19G36140.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36140.4 (Glycine max), 3'ss of exon 10
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 3'ss of exon 8
--taa-aaaataatggaaatt-acaactt---tcttgtgatcctggaaaaattaacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGT
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attattagagtagtctaaattgacggaatgcatttcctaaagatggaagccgtttcaaaatttatttcagca-------tttctcagtctagaaaattgtttctcagGTGACATATAATACACTTCTTAAAGCACGAAGCAAATATGGTTCTTTACTTGAAGTGCGGCAATGCTTGGCTATATATCAGGACATGCGAAATGCAGG--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10233913|gb|BE802801.1|BE802801EST: CATTAACATTATATGAAGAAATGAAATGCTACCAGATACGTCCAAATTGG GTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTTCCTACAT
genomic: CATTAACATTATATGAAGAAATGAAATGCTACCAGATACGTCCAAATTGGgtgagtgcct ... tatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taacagagtatgcttcatcaacttatctctattgattttgttaattatctctcagGTGACATATAACACACTTCTGAAGGCACGCAGTAAATATGGCTTCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGT
ttatctctc CT-rich tract
tctattgattttgtta TA-rich tract