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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttttaggtttatagatggaggaaagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCCATTCTTTCTTGGTCAATTCAGCTGG

Basic information

species Glycine max
transcript GLYMA19G36080.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270375|gb|BM886631.1|BM886631
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|19270064|gb|BM886320.1|BM886320
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213594334|gb|DB969984.1|DB969984
EST:     CACCACAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGG
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|207782854|gb|GD752409.1|GD752409
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|209709199|gb|BW657168.1|BW657168
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213590581|gb|DB973326.1|DB973326
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|13252020|gb|BG362914.1|BG362914
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTACAGAATGCTCTTGGTAAATTTGCTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|7234135|gb|AW569475.1|AW569475
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTATAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213600537|gb|DB960085.1|DB960085
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|209727125|gb|BW663267.1|BW663267
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|9204038|gb|BE330262.1|BE330262
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|208317705|gb|GE112370.1|GE112370
EST:     CCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|209701114|gb|BW652642.1|BW652642
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|19452928|gb|BM954338.1|BM954338
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|19934788|gb|BQ079818.1|BQ079818
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|298180090|gb|HO025305.1|HO025305
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCCATTCTTTCTTGGTCAATTCAGCTGG
                       aattaac  putative branch site (score: 2)
                       aattaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggttttaggtttatagatggaggaaagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGCCATTCTTTCTTGGTCAATTCAGCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG