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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtaaacaacattcacatacctcacaagattgagtttgcatgattgtcattgatttctgcaattctacgtattctctttgccactatgttgaacttctacacttttactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGTTGTCAATAAAGTGTTGTGTGTTTATCGGATGCTTCTTTAGTCACATGT

Basic information

species Glycine max
transcript GLYMA19G36080.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209709200|gb|BW657169.1|BW657169
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|208330925|gb|GE128096.1|GE128096
EST:     AAATCGTTGATC-TTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: AAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|208338492|gb|GE135678.1|GE135678
EST:     AAATCGTTGATCTTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: AAATCGTTGATC-TTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctacgtattctctttgccactatgttgaacttctacacttttactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGTTGTCAATAAAGTGTTGTGTGTTTATCGGATGCTTCTTTAGTCACATGT
                                         cttttacttt  CT-rich tract
                                          ttttacttt  TA-rich tract