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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcacttttcatttcccccttttcttttcttttttcctgacataatctctgaatcatttattttccactgtgaatgcaaatgaacactgttgttgatcctgcttcacagGTTTGGGATGCCTAGTCCAACTACAACTGCAGACGAAGAGGCAAAGAAGAAAGCTCGACTTGCTAGGTTTGCACCTGCTTCCAAAGTTGATCCTCAAGAA

Basic information

species Glycine max
transcript GLYMA19G36050.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325780|gb|GR838661.1|GR838661
EST:     TCAGAGCCATCAAAATCGGAGGATCTGAAGAGGAAGGCTAGGGCAGAAAG                         GTTTGGGATGCCTAGTCCAACTACAACTGCAGACGAAGAGGCAAAGAAGAA
genomic: TCAGAGCCATCAAAATCGGAGGATCTGAAGAGGAAGGCTAGGGCAGAAAGgtttcacttt ... tgcttcacagGTTTGGGATGCCTAGTCCAACTACAACTGCAGACGAAGAGGCAAAGAAGAA
EST: gi|254332536|gb|GR846474.1|GR846474
EST:     TCAGAGCCATCAAAATCGGAGGATCTGAAGAGGAAGGCTAGGGCAGAAAG                         GTTTGG-ATGCCTAGTCCAACTACAACTGCAGACGAAGAGGCAAAGAAGAA
genomic: TCAGAGCCATCAAAATCGGAGGATCTGAAGAGGAAGGCTAGGGCAGAAAGgtttcacttt ... tgcttcacagGTTTGGGATGCCTAGTCCAACTACAACTGCAGACGAAGAGGCAAAGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttattttccactgtgaatgcaaatgaacactgttgttgatcctgcttcacagGTTTGGGATGCCTAGTCCAACTACAACTGCAGACGAAGAGGCAAAGAAGAAAGCTCGACTTGCTAGGTTTGCACCTGCTTCCAAAGTTGATCCTCAAGAA
                                    tgttgat  putative branch site (score: 4)
                                          tcctgcttc  CT-rich tract
                       aaatgaa  TA-rich tract