1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttgttccaaattatttttctcgtgtatgcttgcatctacttatttacttgctgagatctgcaattttatatttgcaaaaactgtgttcgtgtgtgtagCTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTACTAAGTATTTTGGGCTCAACTATATT
species | Glycine max |
transcript | GLYMA19G36000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAATTCAATGCTAGTTTTCTGTGCCCAGAGTGCTTATCTTTTTCTGGTG CTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAAEST: gi|192307518|gb|FK002036.1|FK002036
genomic: AGAATTCAATGCTAGTTTTCTGTGCCCAGAGTGCTTATCTTTTTCTGGTGgtgggtttct ... gtgtgtgtagCTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAA
EST: AGAATTCAATGCTAGTTTTCTGTGCCCAGAGTGCTTATCTTTTTCTGGTG CTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAA
genomic: AGAATTCAATGCTAGTTTTCTGTGCCCAGAGTGCTTATCTTTTTCTGGTGgtgggtttct ... gtgtgtgtagCTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAA
ttacttgctgagatctgcaattttatatttgcaaaaactgtgttcgtgtgtgtagCTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTACTAAGTATTTTGGGCTCAACTATATT
aattttatatttgcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttccaaattatttttctcgtgtatgcttgcatctacttatttacttgctgagatctgcaattttatatttgcaaaaactgtgttcgtgtgtgtagCTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTACTAAGTATTTTGGGCTCAACTATATT
- - - -ccaaatt
- - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - tgcatct
- - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc