1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttgtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTACAG
species | Glycine max |
transcript | GLYMA19G35980.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAAGTCACGTTCACCTCATCGEST: gi|193427745|gb|FK394401.1|FK394401
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
EST: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTAGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCEST: gi|208263419|gb|GE063329.1|GE063329
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATT-GAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGEST: gi|17023537|gb|BM094571.1|BM094571
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|17023537|gb|BM094571.1|BM094571
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|17023537|gb|BM094571.1|BM094571
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|17023537|gb|BM094571.1|BM094571
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|17023537|gb|BM094571.1|BM094571
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|17023537|gb|BM094571.1|BM094571
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|193479319|gb|FK445000.1|FK445000
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|151410994|gb|EV280809.1|EV280809
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGCACCAGEST: gi|207788796|gb|GD761152.1|GD761152
genomic: GGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATT--G----AGgtatgttgtg ... caagc
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGEST: gi|193556594|gb|FK515247.1|FK515247
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CEST: gi|58015478|gb|CX702220.1|CX702220
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccag-
EST: AGCCCCAAAAAATTGAG GCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
genomic: AGCCCCAAAAAATTGAGgtatgttgtg ... caagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCG
atggggtctctgagatctaaactgacgatgttaatctgtctggttcaagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTACAG
atgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaagcaccagGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT