1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaactggtgtttagttcgtctttgaggggcgaagtatcatacagttccaagtagttaagtaaatgatggccttactgtttctggaaaccatttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
species | Glycine max |
transcript | GLYMA19G35980.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAG AGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTTEST: gi|15286621|gb|BI470512.1|BI470512
genomic: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAGgtaattccct ... atttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
EST: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAG AGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTTEST: gi|193520548|gb|FK475109.1|FK475109
genomic: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAGgtaattccct ... atttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
EST: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAG AGTTCGAGGTGTGGATATGAAGAATGEST: gi|208106711|gb|GD906528.1|GD906528
genomic: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAGgtaattccct ... atttccgcagAGTTCGAGGTGTGGATATGAAGAATG
EST: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAG AGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTTEST: gi|209715287|gb|BW654174.1|BW654174
genomic: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAGgtaattccct ... atttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
EST: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCCTTAGCAGATATGGAAG AGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTTEST: gi|298181985|gb|HO026160.1|HO026160
genomic: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAGgtaattccct ... atttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
EST: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAG AGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
genomic: TCGAGGACTCGTTCCCGTGATCTGGAGCGTGCCTTTAGCAGATATGGAAGgtaattccct ... atttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
ttccaagtagttaagtaaatgatggccttactgtttctggaaaccatttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
gccttac putative branch site (score: 3)
ccatttcc putative PPT
ttaagtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaactggtgtttagttcgtctttgaggggcgaagtatcatacagttccaagtagttaagtaaatgatggccttactgtttctggaaaccatttccgcagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA