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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcattgaagaacactattatttgtttaattcgcagagaagggatctcttggtggcctttttcttagttaattacgcaattttagttgtctattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACTCGTTCCCGTGATCTGG

Basic information

species Glycine max
transcript GLYMA19G35980.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619830|gb|DB969494.1|DB969494
EST:     ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|193520548|gb|FK475109.1|FK475109
EST:     CACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: CACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|209715287|gb|BW654174.1|BW654174
EST:     CCACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: CCACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|298181985|gb|HO026160.1|HO026160
EST:     ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttggtggcctttttcttagttaattacgcaattttagttgtctattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACTCGTTCCCGTGATCTGG
                    agttaat  putative branch site (score: 4)
                                           tctatttt  putative PPT
            tttttcttagttaatt  TA-rich tract