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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaatcccatacatatttagtatgtgctttcttggaatgagtcctaagaaaccctcaactagctgacactgacagactttacttgattatatatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGG

Basic information

species Glycine max
transcript GLYMA19G15780.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204224|gb|BE330448.1|BE330448
EST:     CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                         GAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
genomic: CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGgtactccgca ... atatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
EST: gi|51336038|gb|CO979904.1|CO979904
EST:     CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                         GAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
genomic: CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGgtactccgca ... atatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
EST: gi|192303715|gb|FG998669.1|FG998669
EST:     CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCGG                         GAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
genomic: CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGgtactccgca ... atatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
EST: gi|51345312|gb|CO986045.1|CO986045
EST:     CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                         GAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
genomic: CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGgtactccgca ... atatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
EST: gi|298170162|gb|HO018786.1|HO018786
EST:     CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                         GAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
genomic: CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGgtactccgca ... atatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
EST: gi|16347942|gb|BI973537.1|BI973537
EST:     CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                         GAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG
genomic: CCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGgtactccgca ... atatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaaccctcaactagctgacactgacagactttacttgattatatatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGG
                              actttacttgattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcaatcccatacatatttagtatgtgctttcttggaatgagtcctaagaaaccctcaactagctgacactgacagactttacttgattatatatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGG

-caatccc
- - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - accctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac