1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catcctacaagaaaatgattagaaagaatcacaccaatttgactgtggttgcatcatgcctgtgattgattcaactataactgactggctcttttggcagGTTACAGCTGTTAATCTTAGAGATGGAAGCACACTGTCTGTGGACATGGTTGTGGTAGGAATTGGAATACGTCCAAATACAGGGCTGTTTGAAGGCCAGC
species | Glycine max |
transcript | GLYMA19G14500.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
tggttgcatcatgcctgtgattgattcaactataactgactggctcttttggcagGTTACAGCTGTTAATCTTAGAGATGGAAGCACACTGTCTGTGGACATGGTTGTGGTAGGAATTGGAATACGTCCAAATACAGGGCTGTTTGAAGGCCAGC
aactgac putative branch site (score: 2)
ctctttt putative PPT
aactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcctacaagaaaatgattagaaagaatcacaccaatttgactgtggttgcatcatgcctgtgattgattcaactataactgactggctcttttggcagGTTACAGCTGTTAATCTTAGAGATGGAAGCACACTGTCTGTGGACATGGTTGTGGTAGGAATTGGAATACGTCCAAATACAGGGCTGTTTGAAGGCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - aagaaaa
- - - - - - - - - - agaaagaa
- - - - - - - - - - - - - - tcacacc
- - - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgactg