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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaataaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag

Basic information

species Glycine max
transcript GLYMA19G14500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g47790.1 (Oryza sativa), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaataaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag
|| |||||| | ||||||||||||||||| ||||| ||||||||| | || || |  || || ||||| || || |||||||| ||| |  |||| |||||||||||   |||  |  || |     |     | |  ||||   |  || | ||  |   | |||||| || |  |  ||| | | |      ||||  ||                                              
GCCGTTGTCGTCGGTGGTGGATACATAGGAATGGAATGTGCAGCGGCATTGGTCACAAACAACATAAAAGTTACCATGGTCTTCCCTAAAAAACACTGCAgtaagta---tctgattgaatt-----cggtatacattttatttttg-tggggat-ctcgatatgaatataaatg-atgtgt-gttttgtgttctgaatgcag---------------------------------------------

upper sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G320307_T01 (Zea mays), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaat-aaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag
|||||||||||||||||||| ||||| || ||||||||||||||| | || || |  || || || |  || || |||||||| |||||| |||| |||||||||||  | |||  |  || |    ||         ||||  ||  | ||    |  |   ||  | || |  || | ||  | ||||||  |||||   || ||           ||                             
GCTGTTGTCATTGGTGGTGGCTACATTGGAATGGAGTGTGCAGCGGCATTGGTTACTAACAAGATTAGGGTCACCATGGTCTTCCCTGAGAAACACTGCAgtaagtagttgctttcatcaccta-aacagagtttctcttatttatg-taagggcttccaacatgctttaatacgtctcctgctggtctaatt-atgaacttaatttg-----tctgcag-----------------------------

upper sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G27820.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaataaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag
|| ||||| || || ||||| || || || ||||||||||| || |||||||||||||| ||||| ||||| || ||||| || || ||||  || ||||||||||   |   || |  | | ||   |||| |       || |  | ||||| | ||    || ||  |  || || |     | || |   | |  |||                                              
GCGGTTGTTATCGGCGGTGGCTATATCGGTATGGAGTGTGCTGCATCTTTAGTGATCAACAAAATCAATGTGACGATGGTTTTCCCAGAGGCTCACTGCAgtaagt---tctctcgattattacta--aactta-----cgtgtacga-gagaaaggttg---tgtatttagcttgacct----ttttagtttcttatgacag---------------------------------------------

upper sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0014g05380.t01 (Vitis vinifera), 5'ss of exon 4
-------------------------------GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaataaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag
                               |||||| | ||||| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||| || || | ||||||||||||| |   |  |  |  | | |   |   ||  |   | || |  |  | | ||   | ||  |  ||                                                                              
TGATGTCATGCAATCTTGTACTGGTGGGAATGCTGTTCTGATTGGCGGTGGGTACATAGGCATGGAGTGTGCTGCATCTTTGGTGATAAATAAAATAAATgttacaatggtcttcccagaaggacattgcagtaagcactgttctaaattattaccttcttttcctagcatttgaaagacaaaattg--gaatccaaggaat-----------------------------------------------------------------------------

upper sequence: GLYMA19G14500.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0066g01100.t01 (Vitis vinifera), 5'ss of exon 5
GCTGTTGTCATTGGTGGTGGATACATAGGCATGGAGTGTGCAGCGTCTTTAGTGATCAATAAAATAAATGTAACAATGGTCTTTCCTGAGGAACATTGCAgtaagtaaattcttctaaaacttctggcaactcaaaagttatgcataatgagaatgtttagtctgaataaaatttcacttgtagctctaatagatgaaaacaacttaaaaaactgatagatatcctcaatgttttgtttattttacag
|||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||| || || | ||||||||||||| |   |  |  |  | | |   |   ||  |   | || |  |  | | ||   | ||  |    |||||    ||      | | | |||||||    | |                                         
GCTGTTGTGATTGGCGGTGGGTACATAGGCATGGAGTGTGCTGCATCTTTGGTGATAAATAAAATAAATGTTACAATGGTCTTCCCAGAAGCACATTGCAgtaagcactgttctaaattattaccttcttttcctagcatttgaaagacaaaattg--gaatccaa--ggaatttggagtgc----ttcagaaatgaaaattgataat----------------------------------------