Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatatttttcattctcttcaaccttttttatttattattctttgagtattctctttctattttcttcttcttctttttctttcgttccaactaaagccctaggccagagatatgactcatcatgcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTTTTGAT

Basic information

species Glycine max
transcript GLYMA19G14230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733532|gb|BM527664.1|BM527664
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
EST: gi|151395508|gb|EV265385.1|EV265385
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
EST: gi|10236183|gb|BE805071.1|BE805071
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
EST: gi|192295934|gb|FG990930.1|FG990930
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACTGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
EST: gi|8401736|gb|BE057370.1|BE057370
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
EST: gi|6951890|gb|AW423958.1|AW423958
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
EST: gi|18733261|gb|BM527508.1|BM527508
EST:     TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTG                         GACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC
genomic: TATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGgtaaacatat ... gcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcgttccaactaaagccctaggccagagatatgactcatcatgcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTTTTGAT
          aactaaa  putative branch site (score: 2)
 aactaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacatatttttcattctcttcaaccttttttatttattattctttgagtattctctttctattttcttcttcttctttttctttcgttccaactaaagccctaggccagagatatgactcatcatgcttgaacagGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTTTTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG