1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccgttggacaaaatggagatctatcatgcctacattgagtacacaggaattgaattctggagaaagaatgttaataaacgttctgttaaaattattacagGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGAT
species | Glycine max |
transcript | GLYMA19G14000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAG GCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGEST: gi|105633838|gb|DW247201.1|DW247201
genomic: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGgttagaaaaa ... attattacagGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAG
EST: TTGAGAGAATGACTGAAGAAGTTCTTGATGGTATTTGTGGACAGTTACAG GCCCTAGAAACAAAGTEST: gi|151400173|gb|EV269987.1|EV269987
genomic: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGgttagaaaaa ... attattacagGCCCTAGAAACAAAGT
EST: TTGAGAGA-TGACTGAAGAAGT-CTTGATAGTATTTGTGGACAGTTACAG -CCCTAGAA-CAAAGTATGAGG-A-TGACTGGACTCCCA-GCC-TGAAA
genomic: TTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGgttagaaaaa ... attattacagGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAA
ggaattgaattctggagaaagaatgttaataaacgttctgttaaaattattacagGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGAT
tgttaat putative branch site (score: 3)
ttaataaacgttctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgttggacaaaatggagatctatcatgcctacattgagtacacaggaattgaattctggagaaagaatgttaataaacgttctgttaaaattattacagGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -ggacaaaa
- - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaagaa