1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttcaacatgtgctcaactgcaggaacatcgccctcttgtcatttgtttcataattatttactcctttacttaattatgtgtctcccattgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTG
species | Glycine max |
transcript | GLYMA19G14000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTTAATGAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAG CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACTAAGGEST: gi|10235662|gb|BE804550.1|BE804550
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAAC-AAGG
EST: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTEST: gi|105633838|gb|DW247201.1|DW247201
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTT
EST: TATTTAATAAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAG CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGCACAAGGTTTEST: gi|21678014|gb|BQ630365.1|BQ630365
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTT
EST: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG CGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAEST: gi|20813414|gb|BQ297892.1|BQ297892
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGA
EST: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG CGACCAGAATCTGTGAAEST: gi|151400173|gb|EV269987.1|EV269987
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAA
EST: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAG CGACCAGAATCTGTGAAGATTGACGCACGTGGTATCAATGGAACAATGTTT
genomic: TATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGgtatgaaaca ... tgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTT
tgtttcataattatttactcctttacttaattatgtgtctcccattgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTG
acttaat putative branch site (score: 4)
tctcccatt putative PPT
ataattatttactcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcaacatgtgctcaactgcaggaacatcgccctcttgtcatttgtttcataattatttactcctttacttaattatgtgtctcccattgttgttcagCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTG
- - - -catgtgc
- - - - - - - -caactgc
- - - - - - - - - - - - - - - cgccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctccca