1 5' 3' | 2 5' 3' | 3 5' 3' |
...taatccttattctcttaattatttctgtcagattttttcgtagcgaagcaatttattgtaagaaaataaatggcattatggtttcctattgtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCCACTTCACGAT
species | Glycine max |
transcript | GLYMA19G11770.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGEST: gi|193312987|gb|FK282372.1|FK282372
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGG
EST: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTCEST: gi|207770241|gb|GD740973.1|GD740973
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
EST: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGEST: gi|193398149|gb|FK363385.1|FK363385
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGG
EST: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAAGGGTEST: gi|193396482|gb|FK362796.1|FK362796
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAA-GGGT
EST: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAAGGGTEST: gi|193632398|gb|FK583760.1|FK583760
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAA-GGGT
EST: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
aagcaatttattgtaagaaaataaatggcattatggtttcctattgtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCCACTTCACGAT
atttattgtaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatccttattctcttaattatttctgtcagattttttcgtagcgaagcaatttattgtaagaaaataaatggcattatggtttcctattgtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCCACTTCACGAT
- - - - - - - - - - - ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcatta