Sequence
atgc intronic sequence ATGC exonic sequenceAATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaaccggtcagttatagttccatttccattttgtggctagtttatcttttgattctgaaggagggttatgagattatttctgttatatcatttgt...
Basic information
species | Glycine max |
transcript | GLYMA19G11100.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G11100.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os08g29160.1 (Oryza sativa), 5'ss of exon 7
AATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAA---TGGTCATGAGgtaag---aaaccggtcagttatagttccatt-----tccattttgtggcta---gtttatcttttgattctga-----aggagggttatgagattatttctgttatatcatttgt-
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---TGTGTGGGCAACATGGGATCTCATTGCACTAGTTGAAAACGGAAGACATGATGGTACTCCCACACATTCAGTATGCTTTGTTTGGAACAGTGGTCGGGAGgtacattttgcctaatgcggaatgcatcaattagcagtgtactttttgtctaaaaaatcactattttagcttgatattcagtaaactgatgaagttgaattcacaatttttttctag
upper sequence: GLYMA19G11100.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G127374_T01 (Zea mays), 5'ss of exon 7
AATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaaccggtcagttatagttccatttccattttgtggctagtttatcttttgattctgaaggagggttatgagattatttctgttatatcatttgt-------------------------------------------------------
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---TGTTTGGGCAACTTGGGATCTTATTGCTTTAGTTGAAAATGGAAGGCATGATGGTAGTCCCACACATTCAGTTTGTTTCATTTGGAACAGTGGTAGGGAGgtgagttcctt--ttata----caaaaaaatattacggaagagtgagtatttggcataaaagataatttgttcgagtcagtgtgagaccccatgtatggtcttgacaatcaataacttgagggggttaacttgcacgtgacattggctctag
upper sequence: GLYMA19G11100.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G01510.1 (Arabidopsis thaliana), 5'ss of exon 7
AATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaaccggtcagttatagttccatttccattttgtggctagtttatcttttgattctgaa--ggagggttatgagatta-tttctgttatatcatttgt--------------
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AATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGgtga-----ctgttgcttcacatgcttttattactttgctgcaattctttatggaactcgtgatctgtagggttgagcaactagcctctgtgttttaagttacaccttggtttacag
upper sequence: GLYMA19G11100.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0066g01200.t01 (Vitis vinifera), 5'ss of exon 7
AATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaaccggtcagttatagttccatttccattttgtggctagttt---atcttttgattctgaaggagggttatgagattatttctgttatatcatttgt
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AATTGCTTGGGCAACGTGGGATCTTATAGCCATGGTCGAAAAAGGCAAACACGATGGGCCTGCAACCCATGCTGTGACCTTTGTGTGGAATGGGCACGAGgtatttgatgattcagtcattactccattttacttttgatattgatttcttatcacctgaaatcaatgagtaatcc--aaattagtcttccttggcactcta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151407588|gb|EV277403.1|EV277403EST: ATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAG GGAGAGGATGTAACTTTGGTTGGAGATTTTACTGGAAATTGGAAAGAGCCA
genomic: ATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaacc ... tatgtttcagGGAGAGGATGTAACTTTGGTTGGAGATTTTACTGGAAATTGGAAAGAGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaaccggtcagttatagttccatttccattttgtggctagtttatcttttgattctgaaggagggttatgagattatttctgttatatcatttgt
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