1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgctgcatttgtgttaagtaaacatagctagaattcttgtcttgtgtttcttacagcaagtttaatcatttaatcactgcttgatctttgttgttctagGATGCCAACGTTGTCAAAGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTA
species | Glycine max |
transcript | GLYMA19G11100.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAEST: gi|151407588|gb|EV277403.1|EV277403
genomic: GTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCA
EST: GTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAEST: gi|20812620|gb|BQ297098.1|BQ297098
genomic: GTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCA
EST: GAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAEST: gi|51336975|gb|CO980841.1|CO980841
genomic: GAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCA
EST: GTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCA
genomic: GTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCA
tgtttcttacagcaagtttaatcatttaatcactgcttgatctttgttgttctagGATGCCAACGTTGTCAAAGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTA
tctttgtt CT-rich tract
aagtttaatcatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgcatttgtgttaagtaaacatagctagaattcttgtcttgtgtttcttacagcaagtttaatcatttaatcactgcttgatctttgttgttctagGATGCCAACGTTGTCAAAGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - tgcattt
- - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgct