1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatcataatttgacatgtgtttatcactgaatgtgctgctgtttttcttggagtatacccaaggattcatgataccaccattttactcaactatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTAGTCAAA
species | Glycine max |
transcript | GLYMA19G08500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTTACAGGCTGCATATGCAGCGGCATTTAAG AATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGEST: gi|23735001|gb|BU765761.1|BU765761
genomic: AATTTACAGGCTGCATATGCAGCGGCATTTAAGgtagataact ... actatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTG
EST: CTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAG AATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTG
genomic: CTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGgtagataact ... actatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTG
ttcttggagtatacccaaggattcatgataccaccattttactcaactatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTAGTCAAA
ctatttc CT-rich tract
attttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcataatttgacatgtgtttatcactgaatgtgctgctgtttttcttggagtatacccaaggattcatgataccaccattttactcaactatttcagAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTAGTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - -acatgtg
- - - - - - - - - - - - -cactgaa
- - - - - - - - - - - - - - - - -gtgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccat