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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGATGTGCGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttgccagttttgttaaattttagttggtagctcataatcgaaaagatttggagttggctagagttttgtgaaatttga...

Basic information

species Glycine max
transcript GLYMA19G08500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G08500.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g38080.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGATGTGCGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttgccagttttgttaaattttagttggtagct---cataatcgaaaagatttggagttggctagagttttgtgaaatttga
 || ||||    || ||||| |||||||||||  | |||||||| ||||| |||||||| || ||  | || | ||||||||| ||||| |||||||||||||   | |   |||   |||| ||   | ||  |     ||||  |||| | |      ||||   || | |     ||   |||  |  | |  |   || 
AGCCTGGAGCCTCGTGTAGCTGTTGGATTTGCGTTGGATATTGCTCGAGCCATGGAATGTTTGCATGCGCACGCGATCATTCATCGTGATCTTAAACCTGgtaagat-tgctatttggaaacctggttgcttcatgggcatttacatggtggatttctgcaatccggaataataactattcattagt-tcatatacaccatg-

upper sequence: GLYMA19G08500.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165231_T01 (Zea mays), 5'ss of exon 3
TGCTTGGATGTGCGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttgccagttttgttaaattttagttggtagctcataatcgaaaagatttggagttggctagagttttgtgaaatttga
 || | ||    || |||||||| || |||||  | || ||||||||||| ||||||||||||||  | |||||||||||||| ||||| ||||| |||||||         ||| |   |  ||    ||   |   || |   ||  |  ||  |  ||   | | ||   |  || |    |||   |        |
AGCCTTGAGCCTCGTGTAGCAGTGGGGTTTGCATTGGACATTGCCCGAGCTATGGAATGCTTACATGCACATGGGATCATTCATCGTGATCTTAAGCCTGgtaagactagtcattttgtgatctgatcattgcatgctatctatattattcactgcttttctccatgtttaccatgtgtccgtcgttactttcttcggaa

upper sequence: GLYMA19G08500.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09290.t01 (Vitis vinifera), 5'ss of exon 3
TGCTTGGATGTGCGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttgccagttttgtt-aaattttagttggtagctcataatcgaaaagatttggagtt--ggctagagttt--tgtgaaatttga--
||||||||||  ||  | |||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| || ||||| || ||||||||||       || || | | |    ||  ||   || | |   ||  |   |  | || |   ||  | |||||| |      ||||  |   || ||||   |   
TGCTTGGATGCTCGAATTGCAGTTGGTTTTGCTCTTGATATTGCTCGAGCAATGGAATGCCTGCACTCTCATGGGATCATACATCGTGATCTGAAACCTGgta-------agctttttagaagacccctttgaattcagagaatatcttagatttaattagacaagggttttggattctcaaatagacctcactgggaaaacaggca