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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgcaggaagtatctaattgccaataaatatgtctcttgaccaaaatcattagatattcacattatctaactttgctttataatctcttgttgctgcagATGATTCCTGTAGCTGCTAACGATGTTGCATTCTCCACTCATTCAGTCATAGTACATCTAATTATATTGTCCCAAATTGCAATGTTTGAA

Basic information

species Glycine max
transcript GLYMA19G07740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617458|gb|DB965245.1|DB965245
EST:     TTGTCCCTGCTGTTCAGAAGCAGTATTTTGAGAAGTATGGTCATGGCCAG                         ATGATTCCTGTAGCTGCTAACGATGTTGCATTCTCCACTCATTCAGTCATA
genomic: TTGTCCCTGCTGTTCAGAAGCAGTATTTTGAGAAGTATGGTCATGGCCAGgtatgttatt ... gttgctgcagATGATTCCTGTAGCTGCTAACGATGTTGCATTCTCCACTCATTCAGTCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcattagatattcacattatctaactttgctttataatctcttgttgctgcagATGATTCCTGTAGCTGCTAACGATGTTGCATTCTCCACTCATTCAGTCATAGTACATCTAATTATATTGTCCCAAATTGCAATGTTTGAA
                    atctaac  putative branch site (score: 2)
                                       tctcttgtt  putative PPT
                                tttataatct  TA-rich tract