1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
agtttgtctttagctcatctttcattctttgaaagtcatgtattggtctctcacctttgttcttttacatagctaattctttttcttctcttcaGGACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGTGCCCTTGCAGCTTTTGATAAGATGGAGGAAAAG
species | Glycine max |
transcript | GLYMA18G47890.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCAAAGTCAAAGAAAGATACCCTCAAAGCAAGAGCTCAGTCTGCAA AGACTTCAACCATAGTTAGTGGAGATGGTGGGCAATATCAACACAAGCAGTEST: gi|192294504|gb|FG987433.1|FG987433
genomic: GGAGGCAAAGTCAAAGAAAGATACCCTCAAAGCAAGAGCTCAGTCTGCAAagtttgtctt ... cttctcttcaGGACTTCAACCATAGTTAGTG-AGATGGTGGGCAATATCAACACAAGCAGT
EST: GGAGGCAAAGTCAAAGAAAGATACCCTCAAAGTAAGAGCTCAGTCTGCAA AGACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGTGEST: gi|151398835|gb|EV268706.1|EV268706
genomic: GGAGGCAAAGTCAAAGAAAGATACCCTCAAAGCAAGAGCTCAGTCTGCAAagtttgtctt ... cttctcttcaGGACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGTG
EST: GAGGCAAAGTCAAAGAAAGATACCCTCAAAGCAAGAGCTCAGTCTGCGAA G-ACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGT
genomic: GAGGCAAAGTCAAAGAAAGATACCCTCAAAGCAAGAGCTCAGTCTGC-AAagtttgtctt ... cttctcttcaGGACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGT
gtattggtctctcacctttgttcttttacatagctaattctttttcttctcttcaGGACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGTGCCCTTGCAGCTTTTGATAAGATGGAGGAAAAG
agctaat putative branch site (score: 3)
ctaattctttttcttc CT-rich tract
taattctttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgtctttagctcatctttcattctttgaaagtcatgtattggtctctcacctttgttcttttacatagctaattctttttcttctcttcaGGACTTCAACCATAGTTAGTGAGATGGTGGGCAATATCAACACAAGCAGTGCCCTTGCAGCTTTTGATAAGATGGAGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA