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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtacaagacctatcttacattgccattgcacttgcctaccaagattttcattttctactcgcttttttcactctcatctcaagtttgttatttgttaatggcaGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGCGCCAAGGCGTGCCTCGGCCGCACGGGCGCTGGTCGAGTCAGCGGTTCGC

Basic information

species Glycine max
transcript GLYMA18G47810.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427277|gb|CA938797.1|CA938797
EST:     TGTTGTCTTGGCAACAGATGG                         GATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGC
genomic: TGTTGTCTTGGCAACAGATGGggtacaagac ... gttaatggcaGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGC
EST: gi|11688925|gb|BF596663.1|BF596663
EST:     TACAGGCGACTCACTGAGAAGGACGAATTTGTTGTCTTGGCAACAGATGG                         GATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGC
genomic: TACAGGCGACTCACTGAGAAGGACGAATTTGTTGTCTTGGCAACAGATGGggtacaagac ... gttaatggcaGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGC
EST: gi|24205637|gb|BU964890.1|BU964890
EST:     TACAGGCGACTCACTGAGAAGGACGAATTTGTTGTCTTGGCAACAGATGG                         GATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGC
genomic: TACAGGCGACTCACTGAGAAGGACGAATTTGTTGTCTTGGCAACAGATGGggtacaagac ... gttaatggcaGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttctactcgcttttttcactctcatctcaagtttgttatttgttaatggcaGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGCGCCAAGGCGTGCCTCGGCCGCACGGGCGCTGGTCGAGTCAGCGGTTCGC
                                            tgttaat  putative branch site (score: 3)
                                   tttgttatttgttaat  TA-rich tract